Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Acid_1778 | Acid_4900 | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aba:Acid345_0206 peptidoglycan-binding domain 1. | KEGG: xoo:XOO2248 hypothetical protein. | 0.621 |
Acid_1778 | Acid_6997 | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aba:Acid345_0206 peptidoglycan-binding domain 1. | ErfK/YbiS/YcfS/YnhG; KEGG: gme:Gmet_2505 ErfK/YbiS/YcfS/YnhG. | 0.608 |
Acid_4898 | Acid_4899 | KEGG: aba:Acid345_4077 hypothetical protein. | Hypothetical protein; KEGG: sru:SRU_0408 ErfK/YbiS/YcfS/YnhG family. | 0.693 |
Acid_4898 | Acid_4900 | KEGG: aba:Acid345_4077 hypothetical protein. | KEGG: xoo:XOO2248 hypothetical protein. | 0.475 |
Acid_4899 | Acid_4898 | Hypothetical protein; KEGG: sru:SRU_0408 ErfK/YbiS/YcfS/YnhG family. | KEGG: aba:Acid345_4077 hypothetical protein. | 0.693 |
Acid_4899 | Acid_4900 | Hypothetical protein; KEGG: sru:SRU_0408 ErfK/YbiS/YcfS/YnhG family. | KEGG: xoo:XOO2248 hypothetical protein. | 0.753 |
Acid_4900 | Acid_1778 | KEGG: xoo:XOO2248 hypothetical protein. | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aba:Acid345_0206 peptidoglycan-binding domain 1. | 0.621 |
Acid_4900 | Acid_4898 | KEGG: xoo:XOO2248 hypothetical protein. | KEGG: aba:Acid345_4077 hypothetical protein. | 0.475 |
Acid_4900 | Acid_4899 | KEGG: xoo:XOO2248 hypothetical protein. | Hypothetical protein; KEGG: sru:SRU_0408 ErfK/YbiS/YcfS/YnhG family. | 0.753 |
Acid_4900 | Acid_6997 | KEGG: xoo:XOO2248 hypothetical protein. | ErfK/YbiS/YcfS/YnhG; KEGG: gme:Gmet_2505 ErfK/YbiS/YcfS/YnhG. | 0.441 |
Acid_6997 | Acid_1778 | ErfK/YbiS/YcfS/YnhG; KEGG: gme:Gmet_2505 ErfK/YbiS/YcfS/YnhG. | PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aba:Acid345_0206 peptidoglycan-binding domain 1. | 0.608 |
Acid_6997 | Acid_4900 | ErfK/YbiS/YcfS/YnhG; KEGG: gme:Gmet_2505 ErfK/YbiS/YcfS/YnhG. | KEGG: xoo:XOO2248 hypothetical protein. | 0.441 |