Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4902KEGG: sru:SRU_2428 hypothetical protein. (880 aa)    
Predicted Functional Partners:
Acid_2282
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2101 amidohydrolase family enzyme.
  
     0.747
Acid_4901
PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: bfs:BF1815 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
       0.705
Acid_1533
PFAM: peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily.
  
     0.690
Acid_6720
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rba:RB977 probable N-acetylglucosamine-6-phosphate deacetylase.
  
     0.618
Acid_5975
PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: sru:SRU_1319 dipeptidyl-peptidase.
  
     0.605
Acid_6719
PFAM: amidohydrolase; KEGG: aba:Acid345_4500 amidohydrolase.
  
     0.604
Acid_7676
PFAM: peptidase M20; peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain.
  
     0.600
Acid_1831
PFAM: peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain.
  
     0.598
Acid_6721
PFAM: amidohydrolase; KEGG: sru:SRU_1909 amidohydrolase family protein.
  
     0.596
Acid_1172
PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein.
 
     0.593
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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