Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4906KEGG: aba:Acid345_3907 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Acid_1745
PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: mpa:MAP1427 hypothetical protein.
  
  
 0.836
Acid_3062
PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: mpa:MAP1427 hypothetical protein.
  
  
 0.836
Acid_4905
Hypothetical protein.
       0.580
Acid_4904
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: lic:LIC11198 adenylate/guanylate cyclase.
       0.557
Acid_4903
PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
       0.417
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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