Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4909PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB1210 probable hexulose-6-phosphate isomerase. (266 aa)    
Predicted Functional Partners:
Acid_4908
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB5727 probable oxidoreductase.
 
    0.860
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: cac:CAC2612 xylulose kinase.
 
 
 0.678
Acid_4453
KEGG: rba:RB2166 hypothetical protein-transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.661
Acid_5954
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sso:SSO3029 hypothetical protein.
  
     0.613
Acid_5905
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB3239 probable D-tagatose 3-epimerase.
  
     0.594
Acid_6139
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.575
Acid_4907
PFAM: Abortive infection protein; KEGG: ccr:CC3458 hypothetical protein.
       0.562
Acid_1394
KEGG: mca:MCA0776 hypothetical protein.
  
     0.546
Acid_1336
KEGG: rba:RB11762 probable streptomycin biosynthesis protein StrI.
  
    0.529
Acid_5709
PFAM: Ig domain protein, group 2 domain protein; protein of unknown function DUF1549; KEGG: rba:RB5253 similar to S-layer related protein.
  
     0.522
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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