Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Acid_4922PFAM: peptidase S45, penicillin amidase; KEGG: ccr:CC1122 penicillin amidase family protein. (717 aa)    
Predicted Functional Partners:
Acid_4923
PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_A3678 hypothetical protein.
       0.768
Acid_5900
KEGG: aba:Acid345_2533 hypothetical protein.
  
     0.566
Acid_4623
KEGG: aba:Acid345_1624 hypothetical protein.
  
     0.555
Acid_3530
KEGG: aba:Acid345_2533 hypothetical protein.
  
     0.537
Acid_2596
KEGG: aba:Acid345_1624 hypothetical protein.
  
     0.525
Acid_7252
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: aba:Acid345_2533 hypothetical protein.
  
     0.511
Acid_4924
Hypothetical protein.
       0.505
Acid_5214
PFAM: DinB family protein; KEGG: aba:Acid345_2760 hypothetical protein.
  
     0.505
Acid_4902
KEGG: sru:SRU_2428 hypothetical protein.
  
     0.492
Acid_7599
KEGG: aba:Acid345_1624 hypothetical protein.
  
     0.482
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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