STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4927Diguanylate phosphodiesterase; PFAM: EAL domain protein; HDOD; KEGG: tcx:Tcr_0122 diguanylate phosphodiesterase (EAL domain). (409 aa)    
Predicted Functional Partners:
Acid_6313
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDOD; KEGG: dar:Daro_1978 HDIG.
  
     0.690
Acid_0332
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aba:Acid345_2933 MotA/TolQ/ExbB proton channel.
 
     0.560
Acid_7468
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: gka:GK1231 flagellar motor switch protein.
 
     0.542
Acid_4926
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mma:MM0749 glutathione-independent formaldehyde dehydrogenase.
       0.535
Acid_7467
TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_1637 sigma 28.
 
     0.526
Acid_0340
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
     0.518
Acid_7464
PFAM: type III secretion exporter; KEGG: tbd:Tbd_1245 flagellar biosynthetic protein FlhB.
 
     0.513
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
     0.510
Acid_7463
PFAM: type III secretion system inner membrane R protein; KEGG: dvu:DVU3234 flagellar biosynthetic protein FliR.
 
     0.505
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
     0.499
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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