Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4934PFAM: protein of unknown function UPF0118; KEGG: aba:Acid345_0566 protein of unknown function UPF0118. (359 aa)    
Predicted Functional Partners:
Acid_4935
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aba:Acid345_3532 protein of unknown function DUF21.
     
 0.794
Acid_4933
KEGG: hch:HCH_04211 hypothetical protein.
       0.776
Acid_7011
PFAM: protein of unknown function UPF0118; KEGG: aba:Acid345_0555 protein of unknown function UPF0118.
  
     0.725
Acid_0767
PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: aba:Acid345_1300 H+-transporting two-sector ATPase, C subunit.
     
  0.665
Acid_0384
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: aba:Acid345_4172 single-stranded-DNA-specific exonuclease RecJ.
 
     0.500
Acid_6424
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: aba:Acid345_0140 DNA internalization-related competence protein ComEC/Rec2.
 
   
 0.499
Acid_4937
Calcium/proton antiporter, CaCA family; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
  
 0.480
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.472
Acid_4658
PFAM: glycosyl transferase, family 4; KEGG: ade:Adeh_4277 glycosyl transferase, family 4.
  
     0.463
Acid_4936
PFAM: peptidase S45, penicillin amidase; KEGG: aba:Acid345_3370 penicillin amidase.
       0.453
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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