Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4935PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aba:Acid345_3532 protein of unknown function DUF21. (446 aa)    
Predicted Functional Partners:
Acid_4934
PFAM: protein of unknown function UPF0118; KEGG: aba:Acid345_0566 protein of unknown function UPF0118.
     
 0.794
Acid_4933
KEGG: hch:HCH_04211 hypothetical protein.
       0.773
Acid_4937
Calcium/proton antiporter, CaCA family; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
  
 0.506
Acid_6467
TIGRFAM: GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: lic:LIC11831 guanine monophosphate synthase.
     
 0.484
Acid_0085
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gvi:glr1067 HlyB/MsbA family ABC transporter.
  
 
 0.476
Acid_4030
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gvi:glr1067 HlyB/MsbA family ABC transporter.
  
 
 0.455
Acid_4936
PFAM: peptidase S45, penicillin amidase; KEGG: aba:Acid345_3370 penicillin amidase.
       0.453
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.453
Acid_2355
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3781 ABC transporter, ATPase subunit.
  
 
 0.431
Acid_4891
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gvi:glr1067 HlyB/MsbA family ABC transporter.
  
 
 0.430
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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