STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4936PFAM: peptidase S45, penicillin amidase; KEGG: aba:Acid345_3370 penicillin amidase. (741 aa)    
Predicted Functional Partners:
Acid_5979
PFAM: peptidase S45, penicillin amidase; KEGG: oih:OB3304 penicillin acylase.
  
  
 
0.922
Acid_2285
PFAM: beta-lactamase; KEGG: aba:Acid345_1607 beta-lactamase.
     
  0.900
Acid_4466
PFAM: beta-lactamase; KEGG: sth:STH915 beta-lactamase.
     
  0.900
Acid_4937
Calcium/proton antiporter, CaCA family; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
       0.773
Acid_4938
Conserved hypothetical protein; KEGG: mbu:Mbur_0328 protein of unknown function DUF169.
       0.705
Acid_4933
KEGG: hch:HCH_04211 hypothetical protein.
       0.453
Acid_4934
PFAM: protein of unknown function UPF0118; KEGG: aba:Acid345_0566 protein of unknown function UPF0118.
       0.453
Acid_4935
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aba:Acid345_3532 protein of unknown function DUF21.
       0.453
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.