Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4940Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein. (945 aa)    
Predicted Functional Partners:
Acid_0020
SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU3191 TPR domain protein.
  
     0.775
Acid_4941
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: syf:Synpcc7942_2180 bacterioferritin comigratory protein.
       0.773
Acid_0894
KEGG: syn:slr1753 hypothetical protein.
  
     0.768
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.767
Acid_7603
PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein.
  
     0.764
Acid_3072
KEGG: rba:RB4621 hypothetical protein-signal peptide prediction.
  
     0.761
Acid_5629
KEGG: lac:LBA1470 hypothetical protein.
  
     0.758
Acid_3523
Hypothetical protein; KEGG: aba:Acid345_2388 Cna B-type protein.
  
     0.755
Acid_6368
KEGG: bpa:BPP0665 hypothetical protein.
  
     0.755
Acid_5711
Hypothetical protein; KEGG: rba:RB5247 putative WD-repeat containing protein.
  
     0.752
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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