Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_4963Hypothetical protein. (162 aa)    
Predicted Functional Partners:
Acid_4962
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4310 sugar phosphate isomerase/epimerase.
       0.714
Acid_4964
KEGG: mlo:mlr2577 hypothetical protein.
       0.623
Acid_4961
PFAM: Appr-1-p processing domain protein; KEGG: reu:Reut_A1417 Appr-1-p processing.
       0.512
Acid_4965
PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
       0.440
Acid_4966
Hypothetical protein.
       0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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