Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4967Hypothetical protein; KEGG: aba:Acid345_1545 TonB-dependent receptor. (923 aa)    
Predicted Functional Partners:
Acid_6134
PFAM: cytochrome c, class I; KEGG: pfo:Pfl_1824 cytochrome c oxidase cbb3-type, subunit III.
  
     0.773
Acid_3071
PFAM: cytochrome c, class I; KEGG: tbd:Tbd_2545 putative cytochrome c.
  
     0.758
Acid_5025
KEGG: bja:blr6802 hypothetical protein.
  
     0.757
Acid_5345
PFAM: cytochrome c, class I; KEGG: tbd:Tbd_2545 putative cytochrome c.
  
     0.752
Acid_3120
KEGG: bja:blr6802 hypothetical protein.
  
     0.749
Acid_2064
PFAM: cytochrome c, class I; KEGG: sma:SAV6053 putative cytochrome c heme-binding subunit.
  
     0.742
Acid_6139
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.739
Acid_5535
KEGG: aba:Acid345_4447 hypothetical protein.
  
     0.735
Acid_7007
KEGG: mes:Meso_2409 hypothetical protein.
  
     0.719
Acid_7821
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: lla:L0316 competence protein ComEA.
  
     0.710
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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