Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4973KEGG: cps:CPS_4728 hypothetical protein. (487 aa)    
Predicted Functional Partners:
Acid_5402
KEGG: pmt:PMT1514 possible neuromedin U.
  
 0.772
Acid_5403
KEGG: aba:Acid345_3956 hypothetical protein.
  
 0.742
Acid_2053
Hypothetical protein.
   
 
 0.728
Acid_2728
PFAM: Organic solvent tolerance protein; KEGG: aba:Acid345_0160 organic solvent tolerance protein OstA-like.
     
 0.670
Acid_0187
KEGG: gsu:GSU0801 hypothetical protein.
   
 0.669
Acid_5740
KEGG: nmu:Nmul_A0937 hypothetical protein.
   
 0.669
Acid_1647
PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein.
     
 0.634
Acid_2694
PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_3888 peptidase M56, BlaR1.
     
 0.634
Acid_4638
PFAM: polysaccharide export protein; KEGG: aba:Acid345_3311 polysaccharide export protein.
     
 0.634
Acid_0122
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: aba:Acid345_4483 TonB-dependent receptor.
    
 0.569
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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