Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4979PFAM: 3D domain protein; KEGG: bld:BLi02213 YocH. (129 aa)    
Predicted Functional Partners:
Acid_3429
PFAM: Peptidoglycan-binding LysM; KEGG: sdy:SDY_2855 hypothetical protein.
   
  
 0.849
Acid_4897
PFAM: Peptidoglycan-binding LysM; KEGG: LysM domain protein.
   
  
 0.849
Acid_4980
PFAM: arsenate reductase and related; KEGG: dra:DR0136 hypothetical protein; Belongs to the ArsC family.
       0.543
Acid_4981
Hypothetical protein.
       0.543
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.