Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4980PFAM: arsenate reductase and related; KEGG: dra:DR0136 hypothetical protein; Belongs to the ArsC family. (119 aa)    
Predicted Functional Partners:
Acid_4981
Hypothetical protein.
       0.773
Acid_0481
Glycine dehydrogenase (decarboxylating) beta subunit; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; glycine cleavage system P-protein; KEGG: aba:Acid345_2458 glycine dehydrogenase (decarboxylating).
     
  0.728
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
     
  0.728
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.723
Acid_0398
PFAM: glycine cleavage H-protein; KEGG: ade:Adeh_2005 glycine cleavage H-protein.
  
 
  0.676
Acid_0403
Hypothetical protein; KEGG: aba:Acid345_2945 glycine cleavage H-protein.
  
 
  0.676
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
  
 
  0.676
Acid_4203
PFAM: glycine cleavage H-protein; KEGG: aba:Acid345_0767 glycine cleavage H-protein.
  
 
  0.676
Acid_4979
PFAM: 3D domain protein; KEGG: bld:BLi02213 YocH.
       0.543
Acid_4982
PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK0693 AMP-binding enzyme.
     
 0.494
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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