Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_4989Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein. (284 aa)    
Predicted Functional Partners:
Acid_0940
PFAM: protein of unknown function DUF891; KEGG: xft:PD0967 hypothetical protein.
  
 
 0.820
Acid_4183
PFAM: protein of unknown function DUF891; KEGG: nwi:Nwi_0732 protein of unknown function DUF891.
  
 
 0.820
Acid_4986
KEGG: aba:Acid345_1012 hypothetical protein.
       0.517
Acid_4987
KEGG: aba:Acid345_1261 hypothetical protein.
       0.517
Acid_4988
PFAM: protein of unknown function DUF500; KEGG: aba:Acid345_2347 protein of unknown function DUF500.
       0.517
Acid_3250
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE1574 cystathionine gamma-synthase.
  
  
 0.486
Acid_4794
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: bur:Bcep18194_B2807 methionine gamma-lyase.
  
  
 0.486
Acid_5643
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: aba:Acid345_1913 cystathionine gamma-synthase.
  
  
 0.486
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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