STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4996PFAM: polysaccharide deacetylase; KEGG: aba:Acid345_1565 polysaccharide deacetylase. (303 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
    0.805
Acid_4998
PFAM: Aldose 1-epimerase; KEGG: mpa:MAP3850c hypothetical protein.
  
    0.777
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.773
Acid_4995
KEGG: det:DET0581 hypothetical protein.
       0.773
Acid_4997
Hypothetical protein.
       0.773
Acid_4992
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_0373 outer membrane efflux protein.
       0.554
Acid_2074
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sma:SAV1075 secreted protein.
 
    
 0.476
Acid_2305
PFAM: transcriptional regulator PadR family protein.
  
     0.446
Acid_4721
PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY2245 hypothetical protein.
  
     0.444
Acid_0658
PFAM: glycosyl transferase, family 2; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ava:Ava_2346 glycosyl transferase, family 2.
 
  
 0.443
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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