STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_4999PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like. (577 aa)    
Predicted Functional Partners:
Acid_7571
PFAM: WD40 domain protein beta Propeller; KEGG: aor:AO090103000478 predicted protein Pfam: PD40.
  
     0.765
Acid_5000
PFAM: beta-lactamase; KEGG: rba:RB2098 D-aminoacylase.
       0.546
Acid_4956
PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein.
  
    0.524
Acid_3384
PFAM: OmpA/MotB domain protein; KEGG: aba:Acid345_3118 outer membrane protein, OmpA/MotB family.
  
   0.521
Acid_7337
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sru:SRU_0944 acylaminoacyl-peptidase.
  
    0.499
Acid_0514
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: aba:Acid345_0590 tetratricopeptide repeat protein.
 
  
 0.471
pal-2
PFAM: OmpA/MotB domain protein; KEGG: cch:Cag_1911 OmpA domain protein; Belongs to the Pal lipoprotein family.
  
   0.461
Acid_2710
PFAM: Lytic transglycosylase, catalytic; KEGG: aba:Acid345_2691 lytic transglycosylase, catalytic.
 
  
 0.452
pal
PFAM: OmpA/MotB domain protein; KEGG: aba:Acid345_0591 outer membrane protein, OmpA/MotB family; Belongs to the Pal lipoprotein family.
  
   0.449
Acid_0509
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aba:Acid345_0595 MotA/TolQ/ExbB proton channel.
 
  
 0.436
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.