STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5000PFAM: beta-lactamase; KEGG: rba:RB2098 D-aminoacylase. (595 aa)    
Predicted Functional Partners:
Acid_5823
PFAM: beta-lactamase; KEGG: ccr:CC3489 penicillin-binding protein AmpH, putative.
  
     0.773
Acid_7087
PFAM: beta-lactamase; KEGG: ccr:CC3489 penicillin-binding protein AmpH, putative.
  
     0.772
Acid_6751
PFAM: beta-lactamase; KEGG: mma:MM3198 hypothetical protein.
  
     0.708
Acid_4999
PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like.
       0.546
Acid_3631
PFAM: beta-lactamase; Uncharacterised conserved protein UCP016719; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
 
   
0.435
Acid_1992
PFAM: beta-lactamase; KEGG: sru:SRU_0951 beta-lactamase, putative.
  
     0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.