Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_5002PFAM: peptidase M48, Ste24p; KEGG: aba:Acid345_2567 peptidase M48, Ste24p. (294 aa)    
Predicted Functional Partners:
Acid_5001
PFAM: pyruvate kinase; KEGG: tfu:Tfu_1179 pyruvate kinase; Belongs to the pyruvate kinase family.
       0.773
Acid_2624
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_3096 outer membrane efflux protein.
  
     0.532
Acid_6333
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_3096 outer membrane efflux protein.
  
     0.515
Acid_5821
PFAM: permease YjgP/YjgQ family protein; KEGG: aba:Acid345_1515 transporter, YjgP/YjgQ family.
  
     0.486
Acid_1647
PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein.
  
     0.449
Acid_1298
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_4603 tetratricopeptide repeat protein.
 
  
  0.436
Acid_5483
PFAM: outer membrane efflux protein; KEGG: aba:Acid345_0309 outer membrane efflux protein.
  
     0.422
Acid_3324
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_1506 tetratricopeptide TPR_4.
 
 
 0.410
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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