Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Acid_5004KEGG: gvi:gll0760 hypothetical protein. (902 aa)    
Predicted Functional Partners:
Acid_3737
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: sru:SRU_2720 probable acylaminoacyl-peptidase, putative.
  
     0.669
Acid_5307
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sru:SRU_1173 2-oxoglutarate dehydrogenase, E1 component.
    
  0.654
Acid_3724
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28.
  
     0.551
Acid_6586
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: sru:SRU_2720 probable acylaminoacyl-peptidase, putative.
  
     0.551
Acid_6500
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28.
  
     0.544
Acid_0366
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28.
  
     0.539
Acid_3719
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.539
Acid_3552
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28.
  
     0.538
Acid_3530
KEGG: aba:Acid345_2533 hypothetical protein.
  
     0.536
Acid_0880
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28.
  
     0.531
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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