STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5008KEGG: aba:Acid345_2353 hypothetical protein. (966 aa)    
Predicted Functional Partners:
Acid_1615
Hypothetical protein; KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
  
     0.775
Acid_0676
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: aba:Acid345_3271 glycosyl hydrolase, BNR repeat.
  
     0.770
Acid_5009
PFAM: beta-lactamase; KEGG: rpd:RPD_0253 beta-lactamase.
       0.714
Acid_5007
Conserved hypothetical protein; KEGG: bcl:ABC1419 transposase, IS493 family.
       0.590
Acid_5006
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 3 family.
       0.554
Acid_5010
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: bja:blr6207 probable quinoprotein ethanol dehydrogenase precursor.
       0.520
Acid_2646
KEGG: aba:Acid345_3020 conserved hypothetical signal peptide protein.
  
     0.506
Acid_1640
PFAM: peptidase M14, carboxypeptidase A; KEGG: ccr:CC0985 hypothetical protein.
  
     0.503
Acid_6585
KEGG: gvi:gll0760 hypothetical protein.
  
     0.481
Acid_3532
PFAM: peptidase M14, carboxypeptidase A; KEGG: gvi:gll2474 hypothetical protein.
  
     0.471
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.