STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5009PFAM: beta-lactamase; KEGG: rpd:RPD_0253 beta-lactamase. (406 aa)    
Predicted Functional Partners:
Acid_5639
PFAM: beta-lactamase; KEGG: ccr:CC3489 penicillin-binding protein AmpH, putative.
  
     0.760
Acid_5008
KEGG: aba:Acid345_2353 hypothetical protein.
       0.714
Acid_5006
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 3 family.
  
  
 0.560
Acid_5010
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: bja:blr6207 probable quinoprotein ethanol dehydrogenase precursor.
       0.560
Acid_5007
Conserved hypothetical protein; KEGG: bcl:ABC1419 transposase, IS493 family.
       0.547
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.447
glnS
KEGG: dvu:DVU2951 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic.
       0.444
Acid_5013
PFAM: Carbamoyltransferase; KEGG: sme:SMb20472 putative nodulation protein.
       0.444
Acid_3631
PFAM: beta-lactamase; Uncharacterised conserved protein UCP016719; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
 
   
0.401
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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