STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5046KEGG: rba:RB8171 hypothetical protein-transmembrane prediction. (281 aa)    
Predicted Functional Partners:
Acid_6438
KEGG: rba:RB8181 hypothetical protein-transmembrane prediction.
 
     0.781
Acid_6432
KEGG: rba:RB8177 hypothetical protein, putative transmembrane protein.
 
     0.772
Acid_6433
TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: ade:Adeh_4265 conserved hypothetical protein, double-transmembrane region.
 
     0.771
Acid_6434
KEGG: rba:RB8174 hypothetical protein.
 
    0.709
Acid_4453
KEGG: rba:RB2166 hypothetical protein-transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.677
Acid_0930
PFAM: protein of unknown function DUF1552; KEGG: rba:RB12022 hypothetical protein.
  
     0.673
Acid_1243
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12024 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.663
Acid_1244
PFAM: protein of unknown function DUF1552; KEGG: rba:RB12022 hypothetical protein.
  
     0.662
Acid_0593
PFAM: FG-GAP repeat protein; KEGG: ani:AN5280.2 hypothetical protein.
  
     0.638
Acid_2424
PFAM: FG-GAP repeat protein; KEGG: ani:AN5280.2 hypothetical protein.
  
     0.617
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.