STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5060KEGG: aba:Acid345_1376 protein involved in MetA-pathway of phenol degradation. (311 aa)    
Predicted Functional Partners:
Acid_5061
TIGRFAM: Dyp-type peroxidase family; KEGG: sma:SAV549 peroxidase.
 
     0.822
Acid_5057
KEGG: aba:Acid345_1380 hypothetical protein.
       0.773
Acid_5058
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mlo:mlr8366 soluble pyridine nucleotide transhydrogenase.
       0.773
Acid_5059
KEGG: aba:Acid345_1378 hypothetical protein.
       0.773
Acid_4854
KEGG: bbr:BB2726 hypothetical protein.
  
     0.675
Acid_5056
PFAM: Patatin; KEGG: nar:Saro_2051 hypothetical protein.
       0.548
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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