STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5148Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_02736 helix-turn-helix DNA binding protein. (111 aa)    
Predicted Functional Partners:
Acid_2061
PFAM: HipA domain protein; KEGG: neu:NE1310 possible HipA protein.
 
 
 0.715
Acid_3821
Putative transcriptional regulators, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rpc:RPC_2215 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain.
  
    0.552
Acid_5149
TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfr:BF0350 alpha-1,2-mannosidase.
       0.489
Acid_0056
PFAM: protein of unknown function UPF0150; KEGG: mma:MM0031 hypothetical protein.
  
    0.484
Acid_7918
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family.
 
   
 0.425
Acid_6935
KEGG: ade:Adeh_3184 glycosyltransferase 36.
  
     0.424
Acid_0885
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: dar:Daro_2046 putative carbohydrate binding:glycosyltransferase 36:glycosyltransferase 36 associated.
  
   
 0.421
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.