STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5169PFAM: peptidase M50; KEGG: aba:Acid345_1182 peptidase M50. (321 aa)    
Predicted Functional Partners:
Acid_5170
PFAM: glycosyl transferase, family 2; KEGG: hch:HCH_01048 glycosyltransferase involved in cell wall biogenesis.
 
     0.804
Acid_5171
PFAM: glycosyl transferase, group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein.
  
    0.779
Acid_5168
PFAM: histone family protein DNA-binding protein; KEGG: aba:Acid345_1185 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.
     
 0.728
Acid_3241
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.699
Acid_6294
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.699
Acid_3240
PFAM: phosphatidate cytidylyltransferase; KEGG: aba:Acid345_1418 phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
    0.671
Acid_0748
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aba:Acid345_2476 surface antigen (D15).
  
  
 0.589
Acid_0911
PFAM: surface antigen variable number repeat protein; KEGG: aba:Acid345_0248 surface antigen (D15).
  
  
 0.589
Acid_2137
KEGG: mlo:mll0636 outer membrane protein.
  
  
 0.589
Acid_3449
KEGG: dde:Dde_1368 outer membrane protein, OMP85 family.
  
  
 0.589
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.