STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5200PFAM: alpha/beta hydrolase fold; KEGG: sme:SMb20216 putative epoxide hydrolase protein. (339 aa)    
Predicted Functional Partners:
Acid_3007
PFAM: major royal jelly protein; KEGG: sma:SAV148 Drosophila yellow-related protein.
 
     0.771
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
 
 
 0.707
Acid_5199
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH02689 putative glyoxalase protein.
 
     0.700
Acid_2784
KEGG: mlo:mll4584 hypothetical protein.
  
     0.648
Acid_5198
Hypothetical protein.
       0.636
Acid_5271
PFAM: Cupin 2, conserved barrel domain protein; KEGG: aba:Acid345_3724 conserved hypothetical protein, cupin barrel.
  
    0.575
Acid_5270
PFAM: NmrA family protein; KEGG: aba:Acid345_1115 NmrA-like.
  
  
 0.519
Acid_1030
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aba:Acid345_1748 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.509
Acid_3476
MOSC domain containing protein; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; MOSC domain containing protein; Oxidoreductase FAD-binding domain protein; KEGG: aba:Acid345_2660 MOSC ferredoxin--oxidoreductase.
 
  
 0.492
Acid_4377
TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pol:Bpro_3220 phosphonoacetate hydrolase.
  
     0.459
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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