STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5269TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: sma:SAV2783 hypothetical protein. (393 aa)    
Predicted Functional Partners:
Acid_2690
Hypothetical protein; KEGG: aba:Acid345_1882 40-residue YVTN beta-propeller repeat protein.
  
     0.633
Acid_1328
PFAM: peptidase M16 domain protein; KEGG: gox:GOX0591 zinc protease.
  
     0.601
Acid_5270
PFAM: NmrA family protein; KEGG: aba:Acid345_1115 NmrA-like.
 
     0.592
Acid_5271
PFAM: Cupin 2, conserved barrel domain protein; KEGG: aba:Acid345_3724 conserved hypothetical protein, cupin barrel.
 
     0.564
Acid_5268
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_3070 hypothetical protein.
  
    0.487
Acid_3836
PFAM: glycosyl transferase, family 2; KEGG: bur:Bcep18194_B0107 glycosyl transferase, family 2.
  
     0.461
Acid_5413
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: bja:blr6207 probable quinoprotein ethanol dehydrogenase precursor.
 
   0.433
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.