STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5294PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Acid_5297
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.726
Acid_5295
KEGG: aba:Acid345_0201 hypothetical protein.
       0.723
Acid_5296
KEGG: aba:Acid345_0200 hypothetical protein.
       0.723
Acid_5298
PFAM: DoxX family protein; KEGG: bja:bll7169 hypothetical protein.
       0.693
Acid_5299
PFAM: DGPFAETKE family protein; KEGG: aba:Acid345_4454 DGPFAETKE domain protein.
       0.693
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 
 0.620
Acid_4714
PFAM: Thioesterase; glycosyl transferase, group 1; KEGG: ava:Ava_4730 thioesterase.
 
  
 0.571
Acid_5300
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4453 putative sigma factor, ECF subfamily.
       0.495
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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