STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5309TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: chy:CHY_0666 alanine dehydrogenase. (370 aa)    
Predicted Functional Partners:
Acid_7398
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.970
Acid_2515
PFAM: aminotransferase, class V; KEGG: aba:Acid345_0127 alanine--glyoxylate transaminase.
     
 0.910
Acid_3373
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
      0.908
Acid_5426
PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dvu:DVU0571 alanine dehydrogenase.
  
  
 
0.908
Acid_2302
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mmu:12971 crystallin, mu.
    
  0.901
Acid_5671
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: sme:SMb20433 putative cyclodeaminase protein.
    
  0.901
Acid_5310
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: aba:Acid345_1131 butyryl-CoA dehydrogenase.
       0.773
Acid_5311
KEGG: aba:Acid345_4197 hypothetical protein.
       0.689
Acid_5308
PFAM: protein of unknown function DUF1568; KEGG: rba:RB8722 hypothetical protein-transmembrane prediction.
       0.401
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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