STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5335PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1169 TPR repeat. (288 aa)    
Predicted Functional Partners:
Acid_5336
Histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Two component regulator propeller; KEGG: nmu:Nmul_A2694 multi-sensor hybrid histidine kinase.
   
 
 0.784
Acid_0686
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 TPR repeat protein.
 
     0.775
Acid_0878
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
  
     0.775
Acid_1592
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll1889 hypothetical protein.
 
     0.775
Acid_2284
SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
  
     0.775
Acid_6446
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
  
     0.775
Acid_7709
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 TPR repeat protein.
 
     0.775
Acid_7848
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
  
     0.775
Acid_1652
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syn:sll0499 hypothetical protein.
  
     0.736
Acid_0951
PFAM: Tetratricopeptide TPR_4; KEGG: noc:Noc_0166 TPR repeat protein.
  
     0.719
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.