STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5361SMART: AAA ATPase; KEGG: cef:CE2650 putative ABC transporter. (199 aa)    
Predicted Functional Partners:
Acid_5359
PFAM: peptidase M20; peptidase M28; KEGG: ccr:CC3337 peptidase, M20/M25/M40 family.
       0.773
Acid_5360
Hypothetical protein.
       0.773
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.726
Acid_4940
Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
     0.716
Acid_0894
KEGG: syn:slr1753 hypothetical protein.
 
     0.691
Acid_2721
PFAM: peptidase S41; KEGG: cta:CTA_0936 periplasmic protease.
  
     0.689
Acid_3796
Hypothetical protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose-protein mannosyltransferase proteins.
  
     0.684
Acid_6368
KEGG: bpa:BPP0665 hypothetical protein.
  
     0.680
Acid_0020
SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU3191 TPR domain protein.
  
     0.674
Acid_7603
PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein.
  
     0.672
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.