STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5430PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; WD40 domain protein beta Propeller; KEGG: lpp:lpp1611 hypothetical protein. (687 aa)    
Predicted Functional Partners:
Acid_0065
PFAM: beta-lactamase; KEGG: aba:Acid345_3247 beta-lactamase.
 
      0.801
Acid_5605
PFAM: beta-lactamase; KEGG: aba:Acid345_3144 beta-lactamase.
 
      0.608
Acid_5431
PFAM: Cna B domain protein; KEGG: aba:Acid345_0395 hypothetical protein.
       0.551
Acid_3719
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.520
Acid_6833
KEGG: aba:Acid345_4155 transcriptional regulatory protein-like.
  
    0.455
Acid_5537
Periplasmic component of the Tol biopolymer transport system-like protein; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like.
  
    0.447
Acid_2282
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2101 amidohydrolase family enzyme.
  
     0.423
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.