STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5564PFAM: protein of unknown function DUF541; KEGG: nha:Nham_3577 protein of unknown function DUF541. (238 aa)    
Predicted Functional Partners:
Acid_5562
PFAM: protein of unknown function DUF1501; KEGG: aba:Acid345_2868 protein of unknown function (DUF1501).
       0.556
Acid_5563
KEGG: aba:Acid345_2867 hypothetical protein.
       0.556
Acid_5565
PFAM: protein of unknown function DUF892; KEGG: atc:AGR_L_1433 hypothetical protein.
       0.528
Acid_5566
PFAM: zinc/iron permease; KEGG: ade:Adeh_3792 zinc/iron transporter.
       0.496
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.