STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5594Hypothetical protein. (68 aa)    
Predicted Functional Partners:
Acid_5593
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: aba:Acid345_0441 hypothetical protein.
       0.773
Acid_5591
PFAM: cytochrome c oxidase, subunit III; KEGG: aba:Acid345_0439 cytochrome c oxidase subunit III.
       0.752
Acid_5592
PFAM: cytochrome c oxidase, subunit III; KEGG: aba:Acid345_0440 cytochrome c oxidase subunit III.
       0.752
Acid_5590
PFAM: cytochrome c oxidase, subunit I; KEGG: aba:Acid345_0438 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family.
       0.746
Acid_5589
PFAM: cytochrome c oxidase, subunit II; KEGG: aba:Acid345_0437 cytochrome c oxidase, subunit II.
       0.655
Acid_5588
KEGG: rsp:RSP_3937 probable transposase protein, Y4bF.
       0.431
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.