STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5606KEGG: sfl:SF0470 bacteriophage N4 receptor, outer membrane protein. (466 aa)    
Predicted Functional Partners:
Acid_5056
PFAM: Patatin; KEGG: nar:Saro_2051 hypothetical protein.
  
    0.626
Acid_7476
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: eca:ECA4208 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
   
 0.604
Acid_4430
PFAM: TPR repeat-containing protein; polysaccharide deacetylase; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0287 polysaccharide deacetylase.
  
 
 0.571
Acid_5607
KEGG: deh:cbdb_A1264 acetyltransferase, GNAT family.
  
  
 0.557
Acid_7853
PFAM: Creatininase; KEGG: hma:pNG7096 creatinine amidohydrolase.
  
  
 0.530
Acid_4543
PFAM: von Willebrand factor, type A; KEGG: dvu:DVU2127 von Willebrand factor type A domain protein.
  
     0.517
Acid_2641
PFAM: fatty acid desaturase; KEGG: neu:NE0177 fatty acid desaturase, type 2.
  
     0.436
Acid_5608
PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_B2938 copper-translocating P-type ATPase.
     
 0.407
Acid_0745
PFAM: polysaccharide deacetylase; KEGG: bha:BH1917 chitooligosaccharide deacetylase.
  
  
 0.401
Acid_4996
PFAM: polysaccharide deacetylase; KEGG: aba:Acid345_1565 polysaccharide deacetylase.
  
  
 0.401
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.