STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5634PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: gvi:gll4200 similar to cell surface glycoprotein (s-layer protein) related protein. (1035 aa)    
Predicted Functional Partners:
Acid_3278
KEGG: gvi:gll4248 hypothetical protein.
 
     0.768
Acid_1615
Hypothetical protein; KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
  
     0.685
Acid_5633
KEGG: aba:Acid345_3343 membrane protein.
       0.580
Acid_5635
Hypothetical protein.
       0.556
Acid_5631
PFAM: protein of unknown function DUF1634; KEGG: ava:Ava_3786 hypothetical protein.
       0.492
Acid_5632
PFAM: protein of unknown function DUF81; KEGG: aba:Acid345_3912 protein of unknown function DUF81.
       0.492
Acid_5630
Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: rsp:RSP_0885 thiosulfate sulfurtransferase, rhodanese-like.
       0.486
Acid_5628
PFAM: peptidase M22, glycoprotease; KEGG: pca:Pcar_1913 glycoprotease family protein.
       0.434
Acid_5629
KEGG: lac:LBA1470 hypothetical protein.
       0.434
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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