STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5638PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00633 transporter. (254 aa)    
Predicted Functional Partners:
Acid_5991
PFAM: ABC-2 type transporter; KEGG: gsu:GSU2825 membrane protein, putative.
 
  
 0.921
Acid_5992
PFAM: ABC-2 type transporter; KEGG: gme:Gmet_3460 ABC-2.
 
  
 0.921
Acid_5639
PFAM: beta-lactamase; KEGG: ccr:CC3489 penicillin-binding protein AmpH, putative.
       0.782
Acid_4516
PFAM: ABC-2 type transporter; KEGG: tte:TTE2144 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 0.692
Acid_6373
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH998 molybdenum ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
     0.673
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
  
     0.647
Acid_5637
PFAM: transcriptional regulator PadR family protein; KEGG: mlo:mll2486 hypothetical protein.
  
    0.593
Acid_5636
Hypothetical protein.
       0.555
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.553
rpsI
PFAM: ribosomal protein S9; KEGG: aba:Acid345_0562 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
     0.524
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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