STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5651PFAM: Polysulphide reductase, NrfD; KEGG: ade:Adeh_3088 polysulphide reductase, NrfD. (390 aa)    
Predicted Functional Partners:
Acid_5652
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ade:Adeh_3087 4Fe-4S ferredoxin, iron-sulfur binding protein.
 
     0.922
Acid_5650
KEGG: ade:Adeh_3089 hypothetical protein.
       0.768
Acid_5653
KEGG: ade:Adeh_3086 cytochrome c family protein.
       0.733
Acid_0431
KEGG: aba:Acid345_2713 cytochrome b subunit of formate dehydrogenase-like.
  
     0.662
Acid_0432
KEGG: aba:Acid345_0452 cytochrome c family protein.
 
     0.577
Acid_4204
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_2601 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.548
Acid_6924
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_4238 Fe-S-cluster-containing hydrogenase.
 
     0.545
Acid_7896
TIGRFAM: cytochrome C family protein; KEGG: aba:Acid345_3828 multiheme cytochrome.
 
     0.502
Acid_4205
PFAM: Polysulphide reductase, NrfD; KEGG: aba:Acid345_2602 polysulphide reductase, NrfD.
  
     0.470
Acid_6726
TIGRFAM: cytochrome C family protein; KEGG: aba:Acid345_3828 multiheme cytochrome.
 
     0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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