STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5735PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3570 ABC transporter, ATPase subunit. (247 aa)    
Predicted Functional Partners:
Acid_5992
PFAM: ABC-2 type transporter; KEGG: gme:Gmet_3460 ABC-2.
  
 0.950
Acid_5991
PFAM: ABC-2 type transporter; KEGG: gsu:GSU2825 membrane protein, putative.
  
 0.948
Acid_5734
Hypothetical protein.
       0.773
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
  
     0.731
Acid_6373
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH998 molybdenum ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
     0.704
Acid_4516
PFAM: ABC-2 type transporter; KEGG: tte:TTE2144 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.621
Acid_5736
PFAM: SEC-C motif domain protein; KEGG: rpc:RPC_4637 hypothetical protein.
       0.567
cysS
KEGG: aba:Acid345_3992 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.537
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.527
Acid_3460
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2175 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like.
 
     0.518
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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