STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5832KEGG: sma:SAV4160 hypothetical protein. (381 aa)    
Predicted Functional Partners:
Acid_5831
Hypothetical protein.
       0.782
Acid_6388
Hypothetical protein; KEGG: sco:SCO7559 secreted sugar hydrolase.
  
     0.681
Acid_1705
KEGG: rba:RB6658 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.565
Acid_5833
Putative PAS/PAC sensor protein; KEGG: noc:Noc_2979 PAS sensor, serine phosphatase RsbU regulator of sigma subunit; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.553
Acid_7571
PFAM: WD40 domain protein beta Propeller; KEGG: aor:AO090103000478 predicted protein Pfam: PD40.
  
    0.529
Acid_5830
PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mlr6032 transposase.
 
     0.461
Acid_7163
PFAM: putative esterase; KEGG: rba:RB6145 hypothetical protein.
  
     0.460
Acid_5538
KEGG: rba:RB1854 hypothetical protein.
  
     0.449
Acid_3123
TIGRFAM: putative heme-binding protein; KEGG: rba:RB4621 hypothetical protein-signal peptide prediction.
  
     0.446
Acid_3641
PFAM: putative esterase; KEGG: rba:RB9732 probable gluconolactonase precursor-hypothetical secreted or membrane associated protein.
  
     0.438
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.