STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5892PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mth:MTH1784 Mg-protoporphyrin IX monomethyl ester oxidative cyclase. (569 aa)    
Predicted Functional Partners:
Acid_6624
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_0875 Fe-S protein, radical SAM family.
  
     0.729
Acid_3012
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_3496 Fe-S protein, radical SAM family.
  
     0.548
Acid_5891
KEGG: pca:Pcar_1771 hypothetical protein.
       0.537
Acid_0877
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ana:all2023 hypothetical protein.
  
     0.500
Acid_5890
arginyl-tRNA synthetase; KEGG: aba:Acid345_2032 arginine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.494
Acid_4385
Hypothetical protein; KEGG: gme:Gmet_2122 cytochrome c, class I.
  
    0.451
Acid_1246
KEGG: tth:TTC0992 hypothetical protein.
  
     0.440
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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