Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Acid_5895 | Acid_5896 | Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator. | KEGG: aba:Acid345_0896 hypothetical protein. | 0.545 |
Acid_5896 | Acid_5895 | KEGG: aba:Acid345_0896 hypothetical protein. | Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator. | 0.545 |
Acid_5896 | Acid_5897 | KEGG: aba:Acid345_0896 hypothetical protein. | Hypothetical protein. | 0.416 |
Acid_5896 | Acid_6080 | KEGG: aba:Acid345_0896 hypothetical protein. | TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: gka:GK2866 hypothetical protein. | 0.422 |
Acid_5897 | Acid_5896 | Hypothetical protein. | KEGG: aba:Acid345_0896 hypothetical protein. | 0.416 |
Acid_6080 | Acid_5896 | TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: gka:GK2866 hypothetical protein. | KEGG: aba:Acid345_0896 hypothetical protein. | 0.422 |