STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5921KEGG: aba:Acid345_1678 hypothetical protein. (1047 aa)    
Predicted Functional Partners:
Acid_6488
KEGG: aba:Acid345_1678 hypothetical protein.
  
     0.764
Acid_3484
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1683 tetratricopeptide repeat protein.
  
    0.719
Acid_3651
KEGG: ccr:CC0985 hypothetical protein.
  
     0.688
Acid_3518
KEGG: ccr:CC0985 hypothetical protein.
  
     0.630
Acid_3930
PFAM: Calcium-binding EF-hand-containing protein; KEGG: sco:SCO6572 glycosyl hydrolase (secreted protein).
  
     0.622
Acid_4971
KEGG: hch:HCH_00492 hypothetical protein.
  
     0.618
Acid_3516
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.616
Acid_1533
PFAM: peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily.
  
     0.609
Acid_0005
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.608
Acid_1024
KEGG: aba:Acid345_4220 hypothetical protein.
  
     0.579
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.