STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_5932PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_0369 ABC efflux pump, inner membrane subunit. (828 aa)    
Predicted Functional Partners:
Acid_6482
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0366 secretion protein HlyD.
  
    0.799
Acid_6481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0367 ABC transporter, ATPase subunit.
  
   0.788
Acid_6478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0372 ABC transporter, ATPase subunit.
  
   0.758
Acid_4169
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: aba:Acid345_0375 periplasmic sensor signal transduction histidine kinase.
  
     0.713
Acid_5931
PFAM: protein of unknown function DUF81; KEGG: aba:Acid345_1507 protein of unknown function DUF81.
  
    0.655
Acid_5930
PFAM: short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; KEGG: gme:Gmet_0422 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.600
Acid_3595
PFAM: DinB family protein; KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.583
Acid_7937
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3324 ABC transporter, ATPase subunit.
  
   0.521
Acid_7936
PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_3323 secretion protein HlyD.
  
    0.504
Acid_0448
KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.500
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.