STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6027PFAM: regulatory protein, LuxR; KEGG: rpb:RPB_2794 transcriptional regulator, LuxR family. (252 aa)    
Predicted Functional Partners:
Acid_1303
Adenylate/guanylate cyclase; PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sme:SMa1591 putative adenylate cyclase.
 
 
 
 0.641
Acid_3115
Transcriptional regulator, putative ATPase, winged helix family; PFAM: transcriptional regulator domain protein; SMART: AAA ATPase; KEGG: nmu:Nmul_A1246 transcriptional regulator, putative ATPase, winged helix family.
  
 
 0.571
Acid_5780
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pto:PTO0135 serine/threonine protein kinase.
   
 
 0.497
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.