STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6074PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dre:560780 hypothetical protein LOC560780. (262 aa)    
Predicted Functional Partners:
Acid_3077
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0465 beta-ketoacyl synthase.
  
 
 0.685
Acid_6073
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2476 dehydrogenase/reductase (secreted protein).
 
     0.617
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 
 0.546
Acid_6075
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_4793 sigma-24 (FecI-like); Belongs to the sigma-70 factor family.
       0.508
Acid_0818
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: deh:cbdb_A1296 carbohydrate kinase, PfkB family; Belongs to the carbohydrate kinase PfkB family.
   
  
 0.457
Acid_0876
LOC465997; KEGG: ptr:465997 LOC465997.
  
     0.433
Acid_4678
KEGG: tfu:Tfu_1230 hypothetical protein.
  
    0.412
Acid_2598
[Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: gsu:GSU1602 malonyl CoA-acyl carrier protein transacylase.
  
 
 0.402
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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