STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6112PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr6152 ABC transporter ATP-binding protein. (504 aa)    
Predicted Functional Partners:
Acid_6114
PFAM: inner-membrane translocator; KEGG: bja:blr6149 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Acid_6113
PFAM: inner-membrane translocator; KEGG: bja:blr6150 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Acid_6115
PFAM: basic membrane lipoprotein; KEGG: pst:PSPTO_1360 bmp family protein.
 
 
 0.998
Acid_6117
KEGG: cyb:CYB_2198 hypothetical protein.
 
     0.851
Acid_6116
PFAM: Amidase; KEGG: ana:alr1018 Glu-tRNA(Gln) amidotransferase subunit A.
 
     0.803
Acid_6118
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor.
       0.773
Acid_6177
PFAM: inner-membrane translocator; KEGG: oih:OB2573 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.743
Acid_7825
PFAM: inner-membrane translocator; KEGG: dge:Dgeo_2459 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.688
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
     0.583
Acid_6111
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; KEGG: aba:Acid345_3483 peptidase M28.
  
    0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.