STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6145PFAM: oxidoreductase domain protein; KEGG: rba:RB10503 probable lipopolysaccharide biosynthesis protein BplA-putative NADH-dependent oxidoreductase. (429 aa)    
Predicted Functional Partners:
Acid_6144
PFAM: protein of unknown function DUF323; KEGG: rba:RB11811 hypothetical protein.
 
     0.908
Acid_6143
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.786
Acid_0702
PFAM: oxidoreductase domain protein; KEGG: rba:RB6860 probable NADH-dependent dehydrogenase.
  
     0.766
Acid_7008
PFAM: oxidoreductase domain protein; KEGG: rba:RB9026 probable NADH-dependent dyhydrogenase.
  
     0.764
Acid_4241
PFAM: oxidoreductase domain protein; KEGG: bth:BT4448 putative dehydrogenase.
  
     0.763
Acid_3246
PFAM: oxidoreductase domain protein; KEGG: rba:RB2833 conserved hypothetical protein, putative NADH-dependent dyhydrogenase.
  
     0.761
Acid_4818
PFAM: oxidoreductase domain protein; KEGG: rba:RB2833 conserved hypothetical protein, putative NADH-dependent dyhydrogenase.
  
     0.761
Acid_6296
PFAM: oxidoreductase domain protein; KEGG: bth:BT2158 putative dehydrogenase and related proteins.
  
     0.758
Acid_4919
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.757
Acid_4531
PFAM: protein of unknown function DUF1080; KEGG: rba:RB569 conserved hypothetical protein, putative secreted protein.
  
     0.754
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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